{"id":1453,"date":"2024-08-17T10:23:32","date_gmt":"2024-08-17T01:23:32","guid":{"rendered":"http:\/\/cheme.eng.shizuoka.ac.jp\/wordpress\/tashiro\/?page_id=1453"},"modified":"2024-12-09T06:31:29","modified_gmt":"2024-12-08T21:31:29","slug":"%e8%ab%96%e6%96%87","status":"publish","type":"page","link":"http:\/\/cheme.eng.shizuoka.ac.jp\/wordpress\/tashiro\/publications\/%e8%ab%96%e6%96%87\/","title":{"rendered":"\u8ad6\u6587"},"content":{"rendered":"\n

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2024<\/strong><\/p>\n\n\n\n

Ishizawa H, Tashiro Y<\/span>, Okada T, Inoue D, Ike M, Futamata H.
Uncovering the causal relationships in plant-microbe ecosystems: A time series analysis of the duckweed cultivation system for biomass production and wastewater treatment<\/a>
Science of The Total Environment<\/strong> 957:177717 (2024)<\/p>\n\n\n\n

Ueno S, Kanno M, Sharan SZ, Futamata H, Tashiro Y<\/span>.
Pyocyanin stimulates membrane vesicle formation in Pseudomonas aeruginosa<\/em>, but the synthesis is not required for enhanced vesiculation in biofilms<\/a>
The Microbe<\/strong> 4:100137 (2024)<\/p>\n\n\n\n

Takahara M, Hirayama S, Futamata H, Nakao R, Tashiro Y<\/span>.
Biofilm-derived membrane vesicles exhibit potent immunomodulatory activity in Pseudomonas aeruginosa<\/em> PAO1.<\/a>
Microbiology and Immunology<\/strong> 68:224-236 (2024)<\/p>\n\n\n\n

Honjo M, Suzuki K, Katai J, Tashiro Y<\/span>, Aoyagi T, Hori T, Okada T, Saito Y, Futamata H.
Stable states of a microbial community are formed by dynamic metabolic networks with members functioning to achieve both robustness and plasticity.<\/a>
Microbes Environments<\/strong> 39:ME23091 (2024)<\/p>\n\n\n\n

Ishizawa H, Tada M, Tashiro Y<\/span>, Kuroda M, Inoue D, Dohra H, Futamata H, Ike M.
Complete genome sequences of six duckweed-associated bacterial strains for studying community assembly in synthetic plant microbiome.<\/a>
Microbiology Resource Announcements<\/strong> 1:e0128023 (2024)<\/p>\n\n\n\n

Ishizawa H, Tashiro Y<\/span>, Inoue D, Ike M, Futamata H.
Learning beyond-pairwise interactions enables the bottom-up prediction of microbial community structure.<\/a>
Proceedings of the National Academy of Sciences USA<\/strong> 12:e2312396121 (2024)<\/p>\n\n\n\n

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2023<\/strong><\/p>\n\n\n\n

Kanno M, Shiota T, Ueno S, Takahara M, Haneda K, Tahara YO, Shintani M, Nakao R, Miyata M, Kimbara K, Futamata H, Tashiro Y<\/span>.
Identification of genes involved in enhanced membrane vesicle formation in Pseudomonas aeruginosa<\/em> biofilms: surface sensing facilitates vesiculation.<\/a>
Frontiers in Microbiology<\/strong> 14:1252155 (2023)<\/span>
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Tanaka S, Kanno M, T<\/span>ashiro Y<\/u>, Narumi T, Mase N, Sato K.
<\/span>Late-stage diversification strategy for the synthesis of peptide acids and amides using hydrazides.<\/a>
<\/span>Exploration of Drug Science <\/strong>1:322\u2013335 (2023)<\/p>\n\n\n\n

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2022<\/strong><\/p>\n\n\n\n

Tashiro Y<\/span>.
Bacterial membrane vesicles with multiple lipid bilayers: vesicles harboring organelle-like structures.<\/a>
Bioscience, Biotechnology and Biochemistry <\/strong>86:967-973 (2022)
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2021<\/strong><\/p>\n\n\n\n

Aktar S, Okamoto Y, Ueno S, Tahara YO, Imaizumi M, Shintani M, Miyata M, Futamata H, Nojiri H, Tashiro Y<\/span>.
Incorporation of plasmid DNA into bacterial membrane vesicles by peptidoglycan defects in Escherichia coli<\/em>.<\/a>
Frontiers in Microbiology<\/strong>  12:747606 (2021)
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Mohd Din ARJ, Suzuki K, Honjo M, Amano K, Nishimura T, Moriuchi R, Dohra H, Ishizawa H, Kimura M, Tashiro Y<\/span>, Futamata H.
Imbalance in carbon and nitrogen metabolism in Comamonas testosteroni<\/em> R2 is caused by negative feedback and rescued by L-arginine.<\/a>
Microbes and Environments<\/strong> 36:ME21050 (2021)<\/span><\/p>\n\n\n\n

Nakamichi N, Moriuchi R, Dohra H, Futamata H, Tashiro Y<\/span>.
Complete genome sequence of Buttiauxella agrestis<\/i> DSM 9389.<\/a>
Microbiology Resource Announcements<\/strong> 10:e00301-21 (2021)
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Aziz FA, Suzuki K, Honjo M, Amano K, Mohd Din ARJB, Tashiro Y<\/span>, Futamata H.
Coexisting mechanisms of bacterial community are changeable even under similar stable conditions in a chemostat culture.<\/a>
Journal of Bioscience and Bioengineering<\/strong> 131:77-83 (2021)<\/span><\/p>\n\n\n\n

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2020<\/strong><\/p>\n\n\n\n

Aziz FA, Suzuki K, Amano K, Moriuchi R, Dohra H, Tashiro Y<\/span>, Futamata H.
Draft genome sequence of phenol-degrading Variovorax boronicumulans<\/i> strain c24.<\/a>
Microbiology Resource Announcements<\/strong> 9:e00597-20 (2020)
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Takaki K, Tahara YO, Nakamichi N, Hasegawa Y, Shintani M, Ohkuma M, Miyata M, Futamata H, Tashiro Y<\/span>.
<\/span>Multilamellar and multivesicular outer membrane vesicles produced by a Buttiauxella agrestis tolB<\/em> mutant.<\/a>
<\/span>Applied and Environmental Microbiology<\/strong> 86:e01131-20 (2020)
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Aziz FA, Suzuki K, Moriuchi R, Dohra H, Tashiro Y<\/span>, Futamata H.
Draft genome sequence of Variovorax <\/i>boronicumulans<\/i> strain HAB-30.<\/a>
Microbiology Resource Announcements<\/strong> 9:e-01478-19 (2020)<\/p>\n\n\n\n

Miyata M, Robinson RC, Uyeda TQP, Fukumori Y, Fukushima SI, Haruta S, Homma M, Inaba K, Ito M, Kaito C, Kato K, Kenri T, Kinosita Y, Kojima S, Minamino T, Mori H, Nakamura S, Nakane D, Nakayama K, Nishiyama M, Shibata S, Shimabukuro K, Tamakoshi M, Taoka A, Tashiro Y<\/span>, Tulum I, Wada H, Wakabayashi KI.
Tree of motility -A proposed history of motility systems in the tree of life. <\/a>
Genes to Cells<\/strong> 25:6-21 (2020)<\/p>\n\n\n\n

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2019<\/strong><\/p>\n\n\n\n

Tashiro Y<\/span>, Takaki K, Futamata H.
Targeted delivery using membrane vesicles in prokaryotes.<\/a>
Biophysics and Physicobiology<\/strong> 16:114-120 (2019)<\/p>\n\n\n\n

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2018<\/strong><\/p>\n\n\n\n

Suzuki K, Aziz FA, Honjo M, Nishimura T, Masuda K, Minoura A, Kudo Y, Moriuchi R, Dohra H, Tashiro Y<\/span>, Futamata H.
Draft genome sequence of the phenol-degrading bacterium Cupriavidus<\/em> sp. P-10 isolated from trichloroethene-contaminated aquifer soil.<\/a>
Microbiology Resource Announcements<\/strong> 7:e01009-18 (2018)<\/p>\n\n\n\n

Sato K, Tanaka S, Yamamoto K, Tashiro Y<\/span>, Narumi T, Mase N.
Direct synthesis of N-terminal thiazolidine-containing peptide thioesters from peptide hydrazides.<\/a>
Chemical Communications<\/strong> 54:9127-9130 (2018)<\/p>\n\n\n\n

Suzuki K, Kato Y, Yui A, Yamamoto S, Ando S, Rubaba O, Tashiro Y<\/span>, Futamata H.
Bacterial communities adapted to higher external resistance can reduce the onset potential of anode in microbial fuel cells.<\/a>
Journal of Bioscience and Bioengineering  <\/strong>125:565-571 (2018)
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2017<\/span><\/strong><\/p>\n\n\n\n

Azwani FA, Suzuki K, Honjo M, Tashiro Y<\/span>, Futamata H.
Draft genome sequence of Comamonas testosteroni<\/em> R2, consisting of aromatic compound degradation genes for phenol hydroxylase.<\/a>
Genome Announcements<\/strong> 5:e00875-17 (2017)<\/p>\n\n\n\n

Tashiro Y<\/u>, Hasegawa Y, Shintani M, Takaki K, Ohkuma M, Kimbara K, Futamata H.
Interaction of bacterial membrane vesicles with specific species and their potential for delivery to target cells.<\/a>
Frontiers in Microbiology<\/strong> 8:571 (2017)<\/p>\n\n\n\n

Tashiro Y<\/u>, Eida H, Ishii S, Futamata H, Okabe S.
Generation of small colony variants in biofilms by Escherichia coli<\/em> harboring a conjugative F plasmid.<\/a>
Microbes and Environments<\/strong> 32:40-46 (2017)<\/p>\n\n\n\n

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2016<\/span><\/strong><\/p>\n\n\n\n

Monson RE, Tashiro Y<\/u>, Salmond GP.
Overproduction of individual gas vesicle proteins perturbs flotation, antibiotic production and cell division in the enterobacterium Serratia<\/em> sp. ATCC39006.<\/a>
Microbiology<\/strong> 162:1595-1607 (2016)<\/p>\n\n\n\n

Suzuki K, Aziz FA, Inuzuka Y, Tashiro Y<\/u>, Futamata H.
Draft genome sequence of Pseudomonas<\/em> sp. LAB-08 isolated from trichloroethene contaminated aquifer soil.<\/a>
Genome Announcements <\/strong>4:e00948-16 (2016)<\/p>\n\n\n\n

Suzuki K, Owen R, Mork J, Mochihara H, Hosokawa T, Kubota H, Sakamoto H, Matsuda A, Tashiro Y<\/span>, Futamata H
Comparison of electrochemical and microbiological characterization of microbial fuel cells equipped with SPEEK and Nafion membrane electrode assemblies.<\/a>
Journal of Bioscience and Bioengineering<\/strong> 122:322-328 (2016)<\/p>\n\n\n\n

Tashiro Y<\/u>, Monson RE, Ramsay JP, Salmond GP
Molecular genetic and physical analysis of gas vesicles in buoyant enterobacteria.<\/a>
Environmental Microbiology<\/strong> 18:1264-1276 (2016)<\/p>\n\n\n\n

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2015<\/span><\/strong><\/p>\n\n\n\n

Aziz FA, Suzuki K, Ohtaki A, Sagegami K, Hirai H, Seno J, Mizuno N, Inuzuka Y, Saito Y, Tashiro Y<\/u>, Hiraishi A, Futamata H.
Interspecies interactions are an integral determinant of microbial community dynamics.<\/a>
Frontiers in Microbiology<\/strong> 6:1148 (2015)<\/p>\n\n\n\n

Toyofuku M, Tashiro Y<\/u>, Hasegawa Y, Kurosawa M, Nomura N.
Bacterial membrane vesicles, an overlooked environmental colloid: biology, environmental perspectives and applications<\/a>
Advances in Colloid and Interface Science<\/strong> 226:65-77 (2015)<\/p>\n\n\n\n

Hasegawa Y, Futamata H, Tashiro Y<\/u>.
Complexities of cell-to-cell communication through membrane vesicles: implications for selective interaction of membrane vesicles with microbial cells.<\/a>
Frontiers in Microbiology<\/strong> 6:633 (2015)<\/p>\n\n\n\n

Yoshida K, Tashiro Y<\/u>, May T, Okabe S.
Impacts of hydrophilic colanic acid on bacterial attachment to microfiltration membranes and subsequent membrane biofouling.<\/a>
Water Research<\/strong> 76:33-42 (2015)<\/p>\n\n\n\n

Oura H, Tashiro Y<\/u>, Toyofuku M, Ueda K, Kiyokawa T, Ito S, Takahashi Y, Lee S, Nojiri H, Nakajima-Kambe T, Uchiyama H, Futamata H, Nomura N.
Inhibition of Pseudomonas aeruginosa<\/em> swarming motility through 1-naphthol and other bicyclic compounds bearing hydroxyl groups<\/a>.
Applied and Environmental Microbiology<\/strong> 81:2808-2818 (2015)<\/p>\n\n\n\n

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2014<\/span><\/strong><\/p>\n\n\n\n

Yamamoto S, Suzuki K, Araki Y, Mochihara M, Hosokawa T, Chiba Y, Kubota H, Rubaba O, Tashiro Y<\/u>, Futamata H.
Different communities dynamics are capable of generating sustainable electricity from microbial fuel cell with organic wastes.<\/a>
Microbes and Environments<\/strong> 29:145-153 (2014)<\/p>\n\n\n\n

Tashiro Y<\/u>, Inagaki A, Ono K, Inaba T, Yawata Y, Uchiyama H, Nomura N.
Low concentrations of ethanol stimulate biofilm formation in Pseudomonas aeruginosa<\/em>.<\/a>
Bioscience, Biotechnology and Biochemistry <\/strong>78:178-181 (2014)<\/p>\n\n\n\n

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2013<\/span><\/strong><\/p>\n\n\n\n

Tashiro Y<\/u>, Yawata Y, Toyofuku M, Uchiyama H, Nomura N.
Interspecies interaction between Pseudomonas aeruginosa<\/em>.<\/a>
Microbes and Environments<\/strong> 28:13-24 (2013)<\/p>\n\n\n\n

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2012<\/span><\/strong><\/p>\n\n\n\n

Tashiro Y<\/u>, Uchiyama H, Nomura N.
Multifunctional membrane vesicles in Pseudomonas aeruginosa<\/em>.<\/a>
Environmental Microbiology<\/strong> 14:1349-1362 (2012)<\/p>\n\n\n\n

Tashiro Y<\/u>, Kawata K, Taniuchi A, Kakinuma K, May T, Okabe S.
RelE-mediated dormancy is enhanced at high cell density in Escherichia coli<\/em>.<\/a>
Journal of Bacteriology<\/strong> 194:1169-1176 (2012)<\/p>\n\n\n\n

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2011<\/span><\/strong><\/p>\n\n\n\n

Tashiro Y<\/u>, Inagaki A, Shimizu M, Ichikawa S, Takaya N, Nakajima-Kambe T, Uchiyama H, Nomura N.
Characterization of phospholipids in membrane vesicles derived from Pseudomonas aeruginosa<\/em>.<\/a>
Bioscience, Biotechnology and Biochemistry <\/strong>75: 605-607 (2011)<\/p>\n\n\n\n

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2010<\/span><\/strong><\/p>\n\n\n\n

Okabe S, Oshiki M, Kamagata Y, Yamaguchi N, Toyofuku M, Yawata Y, Tashiro Y<\/u>, Nomura N, Ohta H, Ohkuma M, Hiraishi A, Minamisawa K.
A Great Leap forward in Microbial Ecology.<\/a>
Microbes and Environments<\/strong> 25: 230-240 (2010)<\/p>\n\n\n\n

Tashiro Y<\/u>, Ichikawa S, Shimizu M, Toyofuku M, Takaya N, Nakajima-Kambe T, Uchiyama H, Nomura N.
Variation of physiochemical properties and cell association activity of membrane vesicles with growth phase in Pseudomonas aeruginosa<\/em>.<\/a>
Applied and Environmental Microbiology<\/strong> 76:3732-3739 (2010)<\/p>\n\n\n\n

Tashiro Y<\/u>, Ichikawa S, Nakajima-Kambe T, Uchiyama H, Nomura N.
Pseudomonas<\/em> quinolone signal affects membrane vesicle production in not only Gram-negative but also Gram-positive bacteria.<\/a>
Microbes and Environments<\/strong> 25:120-125 (2010)<\/p>\n\n\n\n

Tashiro Y<\/u>, Toyofuku M, Nakajima-Kambe T, Uchiyama H, Nomura N.
Bicyclic compounds repress membrane vesicle production and Pseudomonas<\/em> quinolone signal synthesis in Pseudomonas aeruginosa<\/em>.<\/a>
FEMS Microbiology Letters<\/strong> 304:123-130 (2010)<\/p>\n\n\n\n

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2009<\/span><\/strong><\/p>\n\n\n\n

Tashiro Y<\/u>, Sakai R, Toyofuku M, Sawada I, Nakajima-Kambe T, Uchiyama H, Nomura N.
Outer membrane machinery and alginate synthesis regulators control membrane vesicle production in Pseudomonas aeruginosa<\/em>.<\/a>
Journal of Bacteriology<\/strong> 191:7509-7519 (2009)<\/p>\n\n\n\n

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2008<\/span><\/strong><\/p>\n\n\n\n

Toyofuku M, Nomura N, Kuno N, Tashiro Y<\/u>, Nakajima T, Uchiyama H.
Influence of the Pseudomonas<\/em> quinolone signal on denitrification in Pseudomonas aeruginosa<\/em>.<\/a>
Journal of Bacteriology <\/strong>190:7947-7956 (2008)<\/p>\n\n\n\n

Tashiro Y<\/u>, Nomura N, Nakao R, Senpuku R, Kariyama R, Kumon H, Kosono S, Watanabe H, Nakajima T, Uchiyama H.
Opr86 is essential for viability and is a potential candidate for a protective antigen against biofilm formation by Pseudomonas aeruginosa<\/em>.<\/a>
Journal of Bacteriology <\/strong>190: 3969-3978 (2008)<\/p>\n\n\n\n

Nakao R, Tashiro Y<\/u>, Nomura N, Kosono S, Ochiai K, Yonezawa H, Watanabe H, Senpuku H.
Glycosylation of the OMP85 homolog of Porphyromonas gingivalis<\/em> and its involvement in biofilm formation.<\/a>
Biochemical and Biophysical Research Communications <\/strong>365:784-789 (2008)<\/p>\n","protected":false},"excerpt":{"rendered":"

\u3000\u3000\u3000\u3000 2024 Ishizawa H, Tashiro Y, Okada T, Inoue D, Ike M, Futamata H.Uncovering the causal relationships in pl […]<\/p>\n","protected":false},"author":6,"featured_media":0,"parent":53,"menu_order":1,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-1453","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"http:\/\/cheme.eng.shizuoka.ac.jp\/wordpress\/tashiro\/wp-json\/wp\/v2\/pages\/1453","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/cheme.eng.shizuoka.ac.jp\/wordpress\/tashiro\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/cheme.eng.shizuoka.ac.jp\/wordpress\/tashiro\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/cheme.eng.shizuoka.ac.jp\/wordpress\/tashiro\/wp-json\/wp\/v2\/users\/6"}],"replies":[{"embeddable":true,"href":"http:\/\/cheme.eng.shizuoka.ac.jp\/wordpress\/tashiro\/wp-json\/wp\/v2\/comments?post=1453"}],"version-history":[{"count":8,"href":"http:\/\/cheme.eng.shizuoka.ac.jp\/wordpress\/tashiro\/wp-json\/wp\/v2\/pages\/1453\/revisions"}],"predecessor-version":[{"id":1558,"href":"http:\/\/cheme.eng.shizuoka.ac.jp\/wordpress\/tashiro\/wp-json\/wp\/v2\/pages\/1453\/revisions\/1558"}],"up":[{"embeddable":true,"href":"http:\/\/cheme.eng.shizuoka.ac.jp\/wordpress\/tashiro\/wp-json\/wp\/v2\/pages\/53"}],"wp:attachment":[{"href":"http:\/\/cheme.eng.shizuoka.ac.jp\/wordpress\/tashiro\/wp-json\/wp\/v2\/media?parent=1453"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}