Okubo T., T. Tsukui, H. Maita, S. Okamoto, K, Oshima, T. Fujisawa, A. Saito, H. Futamata, R. Hattori, Y. Shimomura, S. Haruta, S. Morimoto, Y. Wang, Y. Sakai, M. Hattori, S. Aizawa, K. C. P. Nagashima, S. Masuda, T. Hattori, A. Yamashita, Z. Bao, M. Hayatsu, H. Kajiya-Kanegae, I. Yoshinga, K. Sakamoto, K. Toyota, M. Nakao, M. Kohara, M. Anda, R. Niwa, P. Jung-Hwan, R. Sameshima-Saito, S. Tokuda, S. Yamamoto, S. Yamamoto, T. Yokoyama, T. Akutsu, Y. Nakamura, Y. Nakahira-Yanaka, Y. Takada-Hoshino, H. Hirakawa, H. Mistudi, K. Terasawa, M. Itakura, S. Sato, W. Ikeda-Ohtsubo, N. Sakakura, E. Kamimura and K. Minamisawa. 2012. Complete genomic structure of Bradyrhizobium sp. S23321: Insights into symbiosis evolution in soil oligotrophs. Microbes Environ. 27:306-315.

Kaiya, S., S. Utsunomiya, S. Suzuki, N. Yoshida, H. Futamata, T. Yamada, and A. Hiraishi. 2012. Isolation and functional gene analysis of aromatic-hydrocarbon-degrading bacteria from a polychlorinated-dioxin-dechlorinating process. Microbes Environ. 27:127-135.
Narihiro, T. S. Kaiya, H. Futamata, and A. Hiraishi. 2010. Removal of polychlorinated dioxins by semi-aerobic fed-batch composting with biostimulation of “Dehalococcoides”. J. Biosci. Biotechnol. 109 (3):249-256.

Futamata, H., S. Kaiya, M. Sugawara, and A. Hiraishi. 2009. Relationship between reductive- dehalogenase-homologous genes transcriptional level and dechlorinating activity in “Dehalococcoides”-containing tetrachloroethene-dechlorinating enrichment culture TUT2264. Microbes Environ. 24:330-337.

Futamata, H. and A. Hiraishi. 2007. Biodiversity and ecophysiology of anaerobic dechlorinating microorganisms: implications for bioremediation. Current Trend Microbiol. 3:63-92 Review.

Futamata, H., N. Yoshida, T. Kurogi, S. Kaiya and A. Hiraishi. 2007. Reductive dechlorination of chloroethenes by Dehalococcoides-containing cultures enriched from a polychlorinated-dioxin –contaminated mirocosm. The ISME J. 1:471-479.

Okubo, Y., H. Futamata, and A. Hiraishi. 2006. Characterization of phototrophic purple nonsulfur bacteria forming colored microbial mats in a swine wastewater ditch. Appl. Environ. Microbiol. 72:6225-6233.

平石明，二又裕之（2006）生分解性ポリマーを利用した新しい水処理・環境浄化技術．水処理技術 47(7): 301-311.

Hiraishi, A., N. Sakamaki, H. Miyakoda, T. Maruyama, K. Kato, and H. Futamata. 2005. Estimation of “Dehalococcoides” population in lake sediment contaminated with low levels of polychlorinated dioxins. Microbes Environ. 20:216-226.

Hiraishi, A., S. Kaiya, H. Miyakoda, and H. Futamata. 2005. Biotransformation of polychlorinated dioxins and microbial community dynamics in sediment microcosms at different contamination levels. Microbes Envrion. 20:227-242.

Okubo, Y., H. Futamata, and A. Hiraishi. 2005. Distribution of phototrophic purple nonsulfur bacteria in wastewater environments and their capacity for utilization of lower fatty acids. Microbes Environ. 20:135-143.

Futamata, H., Y. Nagano, K. Watanabe, and A. Hiraishi. 2005. Unique kinetic properties of phenol-degrading Variovorax strains responsible for efficient trichloroethylene degradation in a chemostat enrichment. Appl. Environ. Microbiol. 71:904-911.

Kubota, M., K. Kawahara, K. Sekiya, T. Uchida, Y. Hattori, H. Futamata, and A. Hiraishi. 2005. Nocaridioides aromaticivorans sp. nov., a dibenzofuran-degrading bacterium isolated from dioxin-polluted environments. System. Appl. Microbiol.. 28:165-174.

Futamata, H. T. Uchida, N. Yoshida, Y. Yonemitsu, and A. Hiraishi. 2004. Distribution of dibenzofuran-degrading bacteria in soils polluted with different levels of polychlorinated dioxins. Microbes and Environ. 19:172-177.

Sakai, M., H. Futamata, and S. Kanazawa. 2003. Effects of high concentration of inorganic salts on swarming ability in Fluorescent Pseudomonas strains. Biosci. Biotechnol. Biochem. 67:1479-1484.

Futamata, H., S. Harayama, A. Hiraishi, and K. Watanabe. 2003. Functional and structural analyses of trichloroethylene-degrading bacterial communities under different phenol-feeding conditions: laboratory experiments. Appl. Microbiol. Biotechnol. 60:594-600.

Watanabe, K., H. Futamata, and S. Harayama. 2002. Understanding the diversity in catabolic potential of microorganisms for the development of bioremediation strategies. Antonie van Leeuwenhoek 81:655-663.

P. W. Baker, H. Futamata, S. Harayama, and K. Watanabe 2001. Molecular diversity of pMMO and sMMO in a TCE-contaminated aquifer during bioremediation. FEMS Microbiol. Eco. 38: 161-167.

Futamata, H., Harayama, S., and Watanabe, K. 2001. Group-specific monitoring of phenol hydroxylase genes for a functional assessment of phenol-stimulated trichloroethylene bioremediation. Appl. Environ. Microbiol. 67:4671-4677.

Futamata, H., S. Harayama, and K. Watanabe. 2001. Diversity in kinetics of trichloroethylene-degrading activities exhibited by phenol-degrading bacteria. Appl. Microbiol. Biotech. 55:248-253.

Baker, P. H. Futamata, S. Harayama, and K. Wanatabe. 2001. Molecular analysis of the microbial community in a bioremediation site. Environ. Microbiol. 3:1-8.

Teramono, M., H. Futamata, S. Harayama, and K. Watanabe. 1999. Characterization of high-affinity phenol hydroxylase from Comamonas testosteroni R5 by gene cloning and its expression in Pseudomonas aeruginosa PAO1c. Mol. Gen. Genet. 262:552-558.

Sakai, M., H. Futamata, J. S. Kim, and T. Matsuguchi 1998. Effect of soil salinity on population structure of fluorescent pseudomonads in spinach rhizosphere. Soil Sci. Plant Nutr. 44: 701-705.

Sakai, M., H. Ozawa, H. Futamata, J. S. Kim, and T. Matsuguchi 1998. Comparison of root colonization by LR- and HR-isolates of fluorescent pseudomonads in soil with high salinity. Soil Sci. Plant Nutr., 44, 129-133.

Watanabe, K., M. Teramoto, H. Futamata, and S. Harayama. 1998. Molecular detection, isolation, and physiological characterization of functionally dominat phenol-degrading bacteria in activated sludge. Appl. Environ. Microbial. 64: 4396-4402.

Futamata, H., M. Sakai, H. Ozawa, Y. Urashima, T. Sueguchi, and T. Matsuguchi. 1998. Chemotactic response to amino acids of fluorescent pseudomonads isolated from spinach roots grown in soils with different salinity levels. Soil Sci. Plant Nutr. 44: 1-7.

Sakai, M., H. Futamata, H. Ozawa, T. Sueguchi, J. S. Kim, and T. Matsuguchi 1997. Use of bacterial bioluminescence for monitoring the behavior of rhizobacteria introduced to plant rhizosphere. Soil Sci. Plant Nutr. 43: 395-404.

Sakai, M., H. Ozawa, H. Futamata, and T. Matsuguchi. 1996. Effect of calcium ion on spinach root colonization of fluorescent pseudomonads through chemotaxis. Soil Sci. Plant Nutr., 42: 323-331.

Sakai, M., H. Futamata, Y. Urashima, and T. Matsuguchi. 1995. Effect of cations on the growth of fluorescent pseudomonad isolates from spinach roots grown in soils with different salinity levels. Soil Sci. Plant Nutr., 41: 605-611.