2024
Honjo M, Suzuki K, Katai J, Tashiro Y, Aoyagi T, Hori T, Okada T, Saito Y, Futamata H.
Stable states of a microbial community are formed by dynamic metabolic networks with members functioning to achieve both robustness and plasticity.
Microbes Environments 39:ME23091 (2024)
Ishizawa H, Tada M, Tashiro Y, Kuroda M, Inoue D, Dohra H, Futamata H, Ike M.
Complete genome sequences of six duckweed-associated bacterial strains for studying community assembly in synthetic plant microbiome.
Microbiology Resource Announcements 1:e0128023 (2024)
Ishizawa H, Tashiro Y, Inoue D, Ike M, Futamata H.
Learning beyond-pairwise interactions enables the bottom-up prediction of microbial community structure.
Proceedings of the National Academy of Sciences USA 12:e2312396121 (2024)
2023
Kanno M,
Tanaka S, Kanno M, Tashiro Y, Narumi T, Mase N, Sato K. Late-stage diversification strategy for the synthesis of peptide acids and amides using hydrazides. Exploration of Drug Science 1:322–335 (2023)
田代陽介
「細菌が産生する膜小胞とリソースの利活用」
微生物資源の整備と利活用の戦略 p441-446 (2023)
田代陽介、菅野美月
「緑膿菌のバイオフィルム形成と細胞間情報伝達」
バイオフィルム革新的制御技術 p133-138 (2023)
2022
2021
Aktar S,
Nakamichi N,
Aziz FA, Suzuki K, Honjo M, Amano K, Mohd Din ARJB, Tashiro Y, Futamata H.
田代陽介
「細菌における細胞外小胞の形成機構と宿主細胞との相互作用」
実験医学増刊 EVs 細胞外小胞の生物学 39: 126 (2021)
中道菜緒、田代陽介
「バイオフィルムの形成機構・薬剤耐性と制御技術」
PHARM STAGE 20:65-69 (2021)
2020
Aziz FA, Suzuki K, Amano K, Moriuchi R, Dohra H, Tashiro Y, Futamata H.
Aziz FA, Suzuki K, Moriuchi R, Dohra H, Tashiro Y, Futamata H.
Draft genome sequence of Variovorax boronicumulans strain HAB-30.
Microbiology Resource Announcements 9:e-01478-19 (2020)
Miyata M, Robinson RC, Uyeda TQP, Fukumori Y, Fukushima SI, Haruta S, Homma M, Inaba K, Ito M, Kaito C, Kato K, Kenri T, Kinosita Y, Kojima S, Minamino T, Mori H, Nakamura S, Nakane D, Nakayama K, Nishiyama M, Shibata S, Shimabukuro K, Tamakoshi M, Taoka A, Tashiro Y, Tulum I, Wada H, Wakabayashi KI.
Tree of motility -A proposed history of motility systems in the tree of life.
Genes to Cells 25:6-21 (2020)
田代陽介
「バイオフィルムの形成と除去技術」
科学と工業 94:88-92 (2020)
Toyofuku M, Tashiro Y, Nomura N, Eberl L.
“Function of MVs in inter-bacterial communication”
In: Bacterial membrane vesicles – Biogenesis, functions and applications. Springer. 2020
2019
Tashiro Y, Takaki K, Futamata H.
Targeted delivery using membrane vesicles in prokaryotes.
Biophysics and Physicobiology 16:114-120 (2019)
田代陽介
「微生物によるベシクル形成：微生物学から膜学への歩み」
膜 44:96-100 (2019)
2018
Suzuki K, Aziz FA, Honjo M, Nishimura T, Masuda K, Minoura A, Kudo Y, Moriuchi R, Dohra H, Tashiro Y, Futamata H.
Draft genome sequence of the phenol-degrading bacterium Cupriavidus sp. P-10 isolated from trichloroethene-contaminated aquifer soil.
Microbiology Resource Announcements 7:e01009-18 (2018)
Sato K, Tanaka S, Yamamoto K, Tashiro Y, Narumi T, Mase N.
Direct synthesis of N-terminal thiazolidine-containing peptide thioesters from peptide hydrazides.
Chemical Communications 54:9127-9130 (2018)
Suzuki K, Kato Y, Yui A, Yamamoto S, Ando S, Rubaba O, Tashiro Y, Futamata H.
Bacterial communities adapted to higher external resistance can reduce the onset potential of anode in microbial fuel cells.
Journal of Bioscience and Bioengineering 125:565-571 (2018)
田代陽介
「細菌の膜小胞を介した選択的相互作用」
生物物理学会誌 58:214-215 (2018)
田代陽介
「会話をする微生物、そして高まるチームワーク」
Nextcom 34:44-45 (2018)
田代陽介
「バクテリアの細胞外ナノ構造体を利用した選択的伝達」
オレオサイエンス18:221-225 (2018)
田代陽介
「ガス小胞が付与する微生物の垂直運動マシナリー」
生物工学会誌 96:253-256 (2018)
田代陽介
「4本足のリン脂質」
生物工学会誌 96:142 (2018)
2017
Azwani FA, Suzuki K, Honjo M, Tashiro Y, Futamata H.
Draft genome sequence of Comamonas testosteroni R2, consisting of aromatic compound degradation genes for phenol hydroxylase.
Genome Announcements 5:e00875-17 (2017)
Tashiro Y, Hasegawa Y, Shintani M, Takaki K, Ohkuma M, Kimbara K, Futamata H.
Interaction of bacterial membrane vesicles with specific species and their potential for delivery to target cells.
Frontiers in Microbiology 8:571 (2017)
Tashiro Y, Eida H, Ishii S, Futamata H, Okabe S.
Generation of small colony variants in biofilms by Escherichia coli harboring a conjugative F plasmid.
Microbes and Environments 32:40-46 (2017)
田代陽介
「緑膿菌が形成するバイオフィルムの構造と特徴」
バイオフィルムの構造解明と形成制御 松村吉信監修 CMC出版 p13-25 (2017)
田代陽介
「休眠細胞（損傷菌）」
食と微生物の事典 北本勝ひこ ら編 朝倉書店 No. 38 (2017)
2016
Monson RE, Tashiro Y, Salmond GP.
Overproduction of individual gas vesicle proteins perturbs flotation, antibiotic production and cell division in the enterobacterium Serratia sp. ATCC39006.
Microbiology 162:1595-1607 (2016)
Suzuki K, Aziz FA, Inuzuka Y, Tashiro Y, Futamata H.
Draft genome sequence of Pseudomonas sp. LAB-08 isolated from trichloroethene contaminated aquifer soil.
Genome Announcements 4:e00948-16 (2016)
Suzuki K, Owen R, Mork J, Mochihara H, Hosokawa T, Kubota H, Sakamoto H, Matsuda A, Tashiro Y, Futamata H
Comparison of electrochemical and microbiological characterization of microbial fuel cells equipped with SPEEK and Nafion membrane electrode assemblies.
Journal of Bioscience and Bioengineering 122:322-328 (2016)
Tashiro Y, Monson RE, Ramsay JP, Salmond GP
Molecular genetic and physical analysis of gas vesicles in buoyant enterobacteria.
Environmental Microbiology 18:1264-1276 (2016)
2015
Aziz FA, Suzuki K, Ohtaki A, Sagegami K, Hirai H, Seno J, Mizuno N, Inuzuka Y, Saito Y, Tashiro Y, Hiraishi A, Futamata H.
Interspecies interactions are an integral determinant of microbial community dynamics.
Frontiers in Microbiology 6:1148 (2015)
Toyofuku M, Tashiro Y, Hasegawa Y, Kurosawa M, Nomura N.
Bacterial membrane vesicles, an overlooked environmental colloid: biology, environmental perspectives and applications
Advances in Colloid and Interface Science 226:65-77 (2015)
Hasegawa Y, Futamata H, Tashiro Y.
Complexities of cell-to-cell communication through membrane vesicles: implications for selective interaction of membrane vesicles with microbial cells.
Frontiers in Microbiology 6:633 (2015)
Yoshida K, Tashiro Y, May T, Okabe S.
Impacts of hydrophilic colanic acid on bacterial attachment to microfiltration membranes and subsequent membrane biofouling.
Water Research 76:33-42 (2015)
Oura H, Tashiro Y, Toyofuku M, Ueda K, Kiyokawa T, Ito S, Takahashi Y, Lee S, Nojiri H, Nakajima-Kambe T, Uchiyama H, Futamata H, Nomura N.
Inhibition of Pseudomonas aeruginosa swarming motility through 1-naphthol and other bicyclic compounds bearing hydroxyl groups.
Applied and Environmental Microbiology 81:2808-2818 (2015)
Toyofuku M, Tashiro Y, Inaba T, Nomura N.
“Bacterial interactions”
In: Encyclopedia of Biocolloid and Biointerface Science, Vol 1, p68-81 Edited by Hiroyuki Ohshima. Wiley. 2016
2014
Yamamoto S, Suzuki K, Araki Y, Mochihara M, Hosokawa T, Chiba Y, Kubota H, Rubaba O, Tashiro Y, Futamata H.
Different communities dynamics are capable of generating sustainable electricity from microbial fuel cell with organic wastes.
Microbes and Environments 29:145-153 (2014)
Tashiro Y, Inagaki A, Ono K, Inaba T, Yawata Y, Uchiyama H, Nomura N.
Low concentrations of ethanol stimulate biofilm formation in Pseudomonas aeruginosa.
Bioscience, Biotechnology and Biochemistry 78:178-181 (2014)
2013
Tashiro Y, Yawata Y, Toyofuku M, Uchiyama H, Nomura N.
Interspecies interaction between Pseudomonas aeruginosa.
Microbes and Environments 28:13-24 (2013)
豊福雅典、尾花望、田代陽介、八幡穣、野村暢彦
「バイオフィルム研究をめぐる最近の潮流」
感染症 43: 1-6 (2013)
2012
Tashiro Y, Uchiyama H, Nomura N.
Multifunctional membrane vesicles in Pseudomonas aeruginosa.
Environmental Microbiology 14:1349-1362 (2012)
Tashiro Y, Kawata K, Taniuchi A, Kakinuma K, May T, Okabe S.
RelE-mediated dormancy is enhanced at high cell density in Escherichia coli.
Journal of Bacteriology 194:1169-1176 (2012)
豊福雅典、田代陽介、野村暢彦
「微生物コミュニティーにおける細胞間シグナル伝達機構」
バイオサイエンスとインダストリー 70:263-266 (2012)
2011
Tashiro Y, Inagaki A, Shimizu M, Ichikawa S, Takaya N, Nakajima-Kambe T, Uchiyama H, Nomura N.
Characterization of phospholipids in membrane vesicles derived from Pseudomonas aeruginosa.
Bioscience, Biotechnology and Biochemistry 75: 605-607 (2011)
大浦啓、田代陽介、豊福雅典、中島敏明、内山裕夫、野村暢彦
「ナフタレン誘導体による運動性抑制を介した緑膿菌バイオフィルムの制御」
環境バイオテクノロジー学会誌 11: 61-67 (2011)
2010
Okabe S, Oshiki M, Kamagata Y, Yamaguchi N, Toyofuku M, Yawata Y, Tashiro Y, Nomura N, Ohta H, Ohkuma M, Hiraishi A, Minamisawa K.
A Great Leap forward in Microbial Ecology.
Microbes and Environments 25: 230-240 (2010)
Tashiro Y, Ichikawa S, Shimizu M, Toyofuku M, Takaya N, Nakajima-Kambe T, Uchiyama H, Nomura N.
Variation of physiochemical properties and cell association activity of membrane vesicles with growth phase in Pseudomonas aeruginosa.
Applied and Environmental Microbiology 76:3732-3739 (2010)
Tashiro Y, Ichikawa S, Nakajima-Kambe T, Uchiyama H, Nomura N.
Pseudomonas quinolone signal affects membrane vesicle production in not only Gram-negative but also Gram-positive bacteria.
Microbes and Environments 25:120-125 (2010)
Tashiro Y, Toyofuku M, Nakajima-Kambe T, Uchiyama H, Nomura N.
Bicyclic compounds repress membrane vesicle production and Pseudomonas quinolone signal synthesis in Pseudomonas aeruginosa.
FEMS Microbiology Letters 304:123-130 (2010)
田代陽介
「DNAは単なる情報か？−細胞外DNAの機能−」
生物工学会誌88:252 (2010)
2009
Tashiro Y, Sakai R, Toyofuku M, Sawada I, Nakajima-Kambe T, Uchiyama H, Nomura N.
Outer membrane machinery and alginate synthesis regulators control membrane vesicle production in Pseudomonas aeruginosa.
Journal of Bacteriology 191:7509-7519 (2009)
田代陽介
「細菌が出すカプセルとは？」
日本微生物生態学会誌24:8-10 (2009)
2008
Toyofuku M, Nomura N, Kuno N, Tashiro Y, Nakajima T, Uchiyama H.
Influence of the Pseudomonas quinolone signal on denitrification in Pseudomonas aeruginosa.
Journal of Bacteriology 190:7947-7956 (2008)
Tashiro Y, Nomura N, Nakao R, Senpuku R, Kariyama R, Kumon H, Kosono S, Watanabe H, Nakajima T, Uchiyama H.
Opr86 is essential for viability and is a potential candidate for a protective antigen against biofilm formation by Pseudomonas aeruginosa.
Journal of Bacteriology 190: 3969-3978 (2008)
Nakao R, Tashiro Y, Nomura N, Kosono S, Ochiai K, Yonezawa H, Watanabe H, Senpuku H.
Glycosylation of the OMP85 homolog of Porphyromonas gingivalis and its involvement in biofilm formation.
Biochemical and Biophysical Research Communications 365:784-789 (2008)