2024
Ishizawa H, Tashiro Y, Okada T, Inoue D, Ike M, Futamata H.
Uncovering the causal relationships in plant-microbe ecosystems: A time series analysis of the duckweed cultivation system for biomass production and wastewater treatment
Science of The Total Environment 957:177717 (2024)
Ueno S, Kanno M, Sharan SZ, Futamata H, Tashiro Y.
Pyocyanin stimulates membrane vesicle formation in Pseudomonas aeruginosa, but the synthesis is not required for enhanced vesiculation in biofilms
The Microbe 4:100137 (2024)
Takahara M, Hirayama S, Futamata H, Nakao R, Tashiro Y.
Biofilm-derived membrane vesicles exhibit potent immunomodulatory activity in Pseudomonas aeruginosa PAO1.
Microbiology and Immunology 68:224-236 (2024)
Honjo M, Suzuki K, Katai J, Tashiro Y, Aoyagi T, Hori T, Okada T, Saito Y, Futamata H.
Stable states of a microbial community are formed by dynamic metabolic networks with members functioning to achieve both robustness and plasticity.
Microbes Environments 39:ME23091 (2024)
Ishizawa H, Tada M, Tashiro Y, Kuroda M, Inoue D, Dohra H, Futamata H, Ike M.
Complete genome sequences of six duckweed-associated bacterial strains for studying community assembly in synthetic plant microbiome.
Microbiology Resource Announcements 1:e0128023 (2024)
Ishizawa H, Tashiro Y, Inoue D, Ike M, Futamata H.
Learning beyond-pairwise interactions enables the bottom-up prediction of microbial community structure.
Proceedings of the National Academy of Sciences USA 12:e2312396121 (2024)
2023
Kanno M,
Tanaka S, Kanno M, Tashiro Y, Narumi T, Mase N, Sato K. Late-stage diversification strategy for the synthesis of peptide acids and amides using hydrazides. Exploration of Drug Science 1:322–335 (2023)
2022
2021
Aktar S,
Nakamichi N,
Aziz FA, Suzuki K, Honjo M, Amano K, Mohd Din ARJB, Tashiro Y, Futamata H.
2020
Aziz FA, Suzuki K, Amano K, Moriuchi R, Dohra H, Tashiro Y, Futamata H.
Aziz FA, Suzuki K, Moriuchi R, Dohra H, Tashiro Y, Futamata H.
Draft genome sequence of Variovorax boronicumulans strain HAB-30.
Microbiology Resource Announcements 9:e-01478-19 (2020)
Miyata M, Robinson RC, Uyeda TQP, Fukumori Y, Fukushima SI, Haruta S, Homma M, Inaba K, Ito M, Kaito C, Kato K, Kenri T, Kinosita Y, Kojima S, Minamino T, Mori H, Nakamura S, Nakane D, Nakayama K, Nishiyama M, Shibata S, Shimabukuro K, Tamakoshi M, Taoka A, Tashiro Y, Tulum I, Wada H, Wakabayashi KI.
Tree of motility -A proposed history of motility systems in the tree of life.
Genes to Cells 25:6-21 (2020)
2019
Tashiro Y, Takaki K, Futamata H.
Targeted delivery using membrane vesicles in prokaryotes.
Biophysics and Physicobiology 16:114-120 (2019)
2018
Suzuki K, Aziz FA, Honjo M, Nishimura T, Masuda K, Minoura A, Kudo Y, Moriuchi R, Dohra H, Tashiro Y, Futamata H.
Draft genome sequence of the phenol-degrading bacterium Cupriavidus sp. P-10 isolated from trichloroethene-contaminated aquifer soil.
Microbiology Resource Announcements 7:e01009-18 (2018)
Sato K, Tanaka S, Yamamoto K, Tashiro Y, Narumi T, Mase N.
Direct synthesis of N-terminal thiazolidine-containing peptide thioesters from peptide hydrazides.
Chemical Communications 54:9127-9130 (2018)
Suzuki K, Kato Y, Yui A, Yamamoto S, Ando S, Rubaba O, Tashiro Y, Futamata H.
Bacterial communities adapted to higher external resistance can reduce the onset potential of anode in microbial fuel cells.
Journal of Bioscience and Bioengineering 125:565-571 (2018)
2017
Azwani FA, Suzuki K, Honjo M, Tashiro Y, Futamata H.
Draft genome sequence of Comamonas testosteroni R2, consisting of aromatic compound degradation genes for phenol hydroxylase.
Genome Announcements 5:e00875-17 (2017)
Tashiro Y, Hasegawa Y, Shintani M, Takaki K, Ohkuma M, Kimbara K, Futamata H.
Interaction of bacterial membrane vesicles with specific species and their potential for delivery to target cells.
Frontiers in Microbiology 8:571 (2017)
Tashiro Y, Eida H, Ishii S, Futamata H, Okabe S.
Generation of small colony variants in biofilms by Escherichia coli harboring a conjugative F plasmid.
Microbes and Environments 32:40-46 (2017)
2016
Monson RE, Tashiro Y, Salmond GP.
Overproduction of individual gas vesicle proteins perturbs flotation, antibiotic production and cell division in the enterobacterium Serratia sp. ATCC39006.
Microbiology 162:1595-1607 (2016)
Suzuki K, Aziz FA, Inuzuka Y, Tashiro Y, Futamata H.
Draft genome sequence of Pseudomonas sp. LAB-08 isolated from trichloroethene contaminated aquifer soil.
Genome Announcements 4:e00948-16 (2016)
Suzuki K, Owen R, Mork J, Mochihara H, Hosokawa T, Kubota H, Sakamoto H, Matsuda A, Tashiro Y, Futamata H
Comparison of electrochemical and microbiological characterization of microbial fuel cells equipped with SPEEK and Nafion membrane electrode assemblies.
Journal of Bioscience and Bioengineering 122:322-328 (2016)
Tashiro Y, Monson RE, Ramsay JP, Salmond GP
Molecular genetic and physical analysis of gas vesicles in buoyant enterobacteria.
Environmental Microbiology 18:1264-1276 (2016)
2015
Aziz FA, Suzuki K, Ohtaki A, Sagegami K, Hirai H, Seno J, Mizuno N, Inuzuka Y, Saito Y, Tashiro Y, Hiraishi A, Futamata H.
Interspecies interactions are an integral determinant of microbial community dynamics.
Frontiers in Microbiology 6:1148 (2015)
Toyofuku M, Tashiro Y, Hasegawa Y, Kurosawa M, Nomura N.
Bacterial membrane vesicles, an overlooked environmental colloid: biology, environmental perspectives and applications
Advances in Colloid and Interface Science 226:65-77 (2015)
Hasegawa Y, Futamata H, Tashiro Y.
Complexities of cell-to-cell communication through membrane vesicles: implications for selective interaction of membrane vesicles with microbial cells.
Frontiers in Microbiology 6:633 (2015)
Yoshida K, Tashiro Y, May T, Okabe S.
Impacts of hydrophilic colanic acid on bacterial attachment to microfiltration membranes and subsequent membrane biofouling.
Water Research 76:33-42 (2015)
Oura H, Tashiro Y, Toyofuku M, Ueda K, Kiyokawa T, Ito S, Takahashi Y, Lee S, Nojiri H, Nakajima-Kambe T, Uchiyama H, Futamata H, Nomura N.
Inhibition of Pseudomonas aeruginosa swarming motility through 1-naphthol and other bicyclic compounds bearing hydroxyl groups.
Applied and Environmental Microbiology 81:2808-2818 (2015)
2014
Yamamoto S, Suzuki K, Araki Y, Mochihara M, Hosokawa T, Chiba Y, Kubota H, Rubaba O, Tashiro Y, Futamata H.
Different communities dynamics are capable of generating sustainable electricity from microbial fuel cell with organic wastes.
Microbes and Environments 29:145-153 (2014)
Tashiro Y, Inagaki A, Ono K, Inaba T, Yawata Y, Uchiyama H, Nomura N.
Low concentrations of ethanol stimulate biofilm formation in Pseudomonas aeruginosa.
Bioscience, Biotechnology and Biochemistry 78:178-181 (2014)
2013
Tashiro Y, Yawata Y, Toyofuku M, Uchiyama H, Nomura N.
Interspecies interaction between Pseudomonas aeruginosa.
Microbes and Environments 28:13-24 (2013)
2012
Tashiro Y, Uchiyama H, Nomura N.
Multifunctional membrane vesicles in Pseudomonas aeruginosa.
Environmental Microbiology 14:1349-1362 (2012)
Tashiro Y, Kawata K, Taniuchi A, Kakinuma K, May T, Okabe S.
RelE-mediated dormancy is enhanced at high cell density in Escherichia coli.
Journal of Bacteriology 194:1169-1176 (2012)
2011
Tashiro Y, Inagaki A, Shimizu M, Ichikawa S, Takaya N, Nakajima-Kambe T, Uchiyama H, Nomura N.
Characterization of phospholipids in membrane vesicles derived from Pseudomonas aeruginosa.
Bioscience, Biotechnology and Biochemistry 75: 605-607 (2011)
2010
Okabe S, Oshiki M, Kamagata Y, Yamaguchi N, Toyofuku M, Yawata Y, Tashiro Y, Nomura N, Ohta H, Ohkuma M, Hiraishi A, Minamisawa K.
A Great Leap forward in Microbial Ecology.
Microbes and Environments 25: 230-240 (2010)
Tashiro Y, Ichikawa S, Shimizu M, Toyofuku M, Takaya N, Nakajima-Kambe T, Uchiyama H, Nomura N.
Variation of physiochemical properties and cell association activity of membrane vesicles with growth phase in Pseudomonas aeruginosa.
Applied and Environmental Microbiology 76:3732-3739 (2010)
Tashiro Y, Ichikawa S, Nakajima-Kambe T, Uchiyama H, Nomura N.
Pseudomonas quinolone signal affects membrane vesicle production in not only Gram-negative but also Gram-positive bacteria.
Microbes and Environments 25:120-125 (2010)
Tashiro Y, Toyofuku M, Nakajima-Kambe T, Uchiyama H, Nomura N.
Bicyclic compounds repress membrane vesicle production and Pseudomonas quinolone signal synthesis in Pseudomonas aeruginosa.
FEMS Microbiology Letters 304:123-130 (2010)
2009
Tashiro Y, Sakai R, Toyofuku M, Sawada I, Nakajima-Kambe T, Uchiyama H, Nomura N.
Outer membrane machinery and alginate synthesis regulators control membrane vesicle production in Pseudomonas aeruginosa.
Journal of Bacteriology 191:7509-7519 (2009)
2008
Toyofuku M, Nomura N, Kuno N, Tashiro Y, Nakajima T, Uchiyama H.
Influence of the Pseudomonas quinolone signal on denitrification in Pseudomonas aeruginosa.
Journal of Bacteriology 190:7947-7956 (2008)
Tashiro Y, Nomura N, Nakao R, Senpuku R, Kariyama R, Kumon H, Kosono S, Watanabe H, Nakajima T, Uchiyama H.
Opr86 is essential for viability and is a potential candidate for a protective antigen against biofilm formation by Pseudomonas aeruginosa.
Journal of Bacteriology 190: 3969-3978 (2008)
Nakao R, Tashiro Y, Nomura N, Kosono S, Ochiai K, Yonezawa H, Watanabe H, Senpuku H.
Glycosylation of the OMP85 homolog of Porphyromonas gingivalis and its involvement in biofilm formation.
Biochemical and Biophysical Research Communications 365:784-789 (2008)